PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Kaladp0844s0025.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Saxifragales; Crassulaceae; Kalanchoe
Family C2H2
Protein Properties Length: 230aa    MW: 24890.3 Da    PI: 9.162
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Kaladp0844s0025.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001163185123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++Cp C k++++   L  H r+H
  Kaladp0844s0025.1.p 163 HECPVCYKVYKSGQALGGHKRSH 185
                          79******************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.59E-8427No hitNo description
SMARTSM003550.062527IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.993532IPR007087Zinc finger, C2H2
PfamPF139129.2E-8527IPR007087Zinc finger, C2H2
PROSITE patternPS000280727IPR007087Zinc finger, C2H2
SuperFamilySSF576678.59E-8158185No hitNo description
SMARTSM003550.56163185IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-12163185IPR007087Zinc finger, C2H2
PROSITE patternPS000280165185IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MEEKHKCKLC ARRFGSGRAL GGHMRSHFTI LPVPPKTQPT SLIGTPSSSS EAKNPSQLED  60
SVVLDDESET ESKSLGPSGS RRVGKRSISE WRKLGAIKKS KSKKRSTEQA VSSVSETCSE  120
EDLAMCLMLL SRDKWVRKEC PVGRRNQIFL KNGTGGGGDV KIHECPVCYK VYKSGQALGG  180
HKRSHLFSST STAAAHSSDA DNVWLIDLNL PAPLEDGGDM SHNQIPVLC*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608704.14e-39C2H2-type zinc-finger protein, putative
STRINGVIT_00s0229g00050.t013e-38(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02030.12e-32C2H2-like zinc finger protein